Mostrar el registro sencillo del ítem

Bacterial diversity analysis of freshwater sources for human use in rural areas of the tropical Andean region of Colombia [Análisis de la diversidad bacteriana en aguas superficiales usadas para consumo humano en zonas rurales de la región andina colombiana]

dc.contributor.authorBedoya K
dc.contributor.authorGaleano L
dc.contributor.authorHincapié M.M
dc.contributor.authorMesa J.A
dc.contributor.authorAlzate J.F.
dc.date.accessioned2022-09-14T14:33:29Z
dc.date.available2022-09-14T14:33:29Z
dc.date.created2021
dc.identifier.issn1239392
dc.identifier.urihttp://hdl.handle.net/11407/7398
dc.descriptionPotable water supply and sanitization in rural areas in developing countries are still inadequate. The main risk associated with unsafe drinking water is the infection with pathogenic microorganisms. Objective: In this study, we investigate the bacterial diversity and the potentially pathogenic bacteria in water samples from different points of distribution in three rural villages from the Andean region of Colombia. Methods: Illumina libraries for water samples were prepared and sequenced using 300 bp paired-end MiSeq protocol, the bioinformatic analyses were performed with Mothur pipeline and the phyloseq package in Rstudio. Results: The microbial community composition showed statistically significant differences according to the village and the sample origin. Alpha, Beta, and Gammaproteobacteria were the dominant class detected in all water samples. The most relevant pathogenic genera detected in the surface were Legionella, Mycobacterium, Yersinia, Burkholderia, and Rickettsia. In the tap water samples, potential pathogens like Streptococcus, Staphylococcus, Corynebacterium, Nocardia, and Escherichia/Shigella were detected. © 2021 Asociacion Colombiana de Infectologia. All rights reserved.eng
dc.language.isoeng
dc.publisherAsociacion Colombiana de Infectologia
dc.relation.isversionofhttps://www.scopus.com/inward/record.uri?eid=2-s2.0-85113913333&doi=10.22354%2fIN.V26I1.988&partnerID=40&md5=daf07dfdadff5323c950778ca1c9b54e
dc.sourceInfectio
dc.titleBacterial diversity analysis of freshwater sources for human use in rural areas of the tropical Andean region of Colombia [Análisis de la diversidad bacteriana en aguas superficiales usadas para consumo humano en zonas rurales de la región andina colombiana]
dc.typeArticle
dc.rights.accessrightsinfo:eu-repo/semantics/restrictedAccess
dc.publisher.programIngeniería Ambiental
dc.type.spaArtículo
dc.identifier.doi10.22354/IN.V26I1.988
dc.subject.keywordColombian villageeng
dc.subject.keywordDrinking watereng
dc.subject.keywordMetataxonomicseng
dc.subject.keywordMicrobiotaeng
dc.subject.keywordPathogenic bacteriaeng
dc.relation.citationvolume26
dc.relation.citationissue1
dc.relation.citationstartpage11
dc.relation.citationendpage18
dc.publisher.facultyFacultad de Ingenierías
dc.affiliationBedoya, K., Centro Nacional de Secuenciación Genómica - CNSG, Universidad de Antioquia-UdeA, Carrera 53 # 61 – 30, Antioquia, Medellín, Colombia
dc.affiliationGaleano, L., Universidad de Medellín, Facultad de Ingeniería, Cra. 87 #30-65, Antioquia, Medellín, Colombia
dc.affiliationHincapié, M.M., Universidad de Medellín, Facultad de Ingeniería, Cra. 87 #30-65, Antioquia, Medellín, Colombia
dc.affiliationMesa, J.A., Centro Nacional de Secuenciación Genómica - CNSG, Universidad de Antioquia-UdeA, Carrera 53 # 61 – 30, Antioquia, Medellín, Colombia
dc.affiliationAlzate, J.F., Centro Nacional de Secuenciación Genómica - CNSG, Universidad de Antioquia-UdeA, Carrera 53 # 61 – 30, Antioquia, Medellín, Colombia, Departamento de Microbiología y Parasitología, Facultad de Medicina, Universidad de Antioquia-UdeA, Cra. 51d #62-29, Medellín, Colombia
dc.relation.referencesHttps://www.paho.org/es/temas/agua-saneamiento.2020, Pan American Health Organization
dc.relation.referencesHealth equity: challenges in low income countries (2009) Afr Health Sci, 9, pp. 49-51. , estadistica d. Suppl 2
dc.relation.referencesPandey, PK, Kass, PH, Soupir, ML, Biswas, S, Singh, VP., Contamination of water resources by pathogenic bacteria (2014) AMB Express, 4, pp. 1-16
dc.relation.referencesCabral, JPS., Water microbiology. Bacterial pathogens and water (2010) Int J Environ Res Public Health, 7, pp. 3657-3703
dc.relation.referencesBae, S, Lyons, C, Onstad, N., A culture-dependent and metagenomic approach of household drinking water from the source to point of use in a developing country (2019) Water Res X, 2, p. 100026
dc.relation.referencesMotlagh, AM, Yang, Z., Detection and occurrence of indicator organisms and pathogens (2019) Water Environ Res, 91, pp. 1402-1408
dc.relation.referencesKaestli, M, O’Donnell, M, Rose, A, Webb, JR, Mayo, M, Currie, BJ, Gibb, K., Opportunistic pathogens and large microbial diversity detected in source-to-distribution drinking water of three remote communities in Northern Australia (2019) PLoS Negl Trop Dis, 13, pp. 1-23
dc.relation.referencesMukherjee, N, Bartelli, D, Patra, C, Chauhan, B V., Dowd, SE, Banerjee, P., Microbial diversity of source and point-of-use water in rural Haiti - A pyrosequencing-based metagenomic survey (2016) PLoS One, 11, pp. 1-16
dc.relation.referencesCann, KF, Thomas, DR, Salmon, RL, Wyn-Jones, AP, Kay, D., Extreme water-related weather events and waterborne disease (2013) Epidemiol Infect, 141, pp. 671-686
dc.relation.referencesCarlos, J, Moreno, B., (2013) Estado de la Vigilancia de la Calidad del Agua para Consumo Humano en Colombia Estado de la Vigilancia de la Calidad del Director Redes en Salud Pública 2015
dc.relation.referencesLiborina, M, (1999) Municipio de Liborina, Proyecto de esquema de ordenamiento territorial - E.O.T, , de. Municipio de Liborina
dc.relation.references(2018), www.dane.gov.co, Estadística DN de
dc.relation.referencesHenao Pulgarín, OA., (2016) Municipio De Liborina Óscar Alveiro Henao Pulgarin Vn Sueño En El Que Todos Cabemos
dc.relation.references(2012) ZONIFICACIÓN DE RIESGO POR MOVIMIENTOS EN MASA INUNDACIÓN Y AVENIDAS TORRENCIALES, , GRUPO GESTIÓN DEL RIESGO. ATENCIÓN DE ÁREAS AFECTADAS POR EVENTOS DESASTROSOS. Of Control ESTRATÉGICO CORNARE
dc.relation.referencesOcampo, F, de, J., (2015) Plan De Desarrollo 2012 – 2015 “El Peñol, Alcaldía Para Todos
dc.relation.references(2016) Plan de Desarrollo de Jardín, Antioquia 2016-2019 “La Alcaldía que Quiere la Gente, pp. 1-215. , Alcaldía Municipal de Jardín
dc.relation.referencesSchloss, PD, Westcott, SL, Ryabin, T, Hall, JR, Hartmann, M, Hollister, EB, Lesniewski, RA, Weber, CF., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities (2009) Appl Environ Microbiol, 75, pp. 7537-7541
dc.relation.referencesCole, JR, Wang, Q, Fish, JA, Chai, B, McGarrell, DM, Sun, Y, Brown, CT, Tiedje, JM., Ribosomal Database Project: Data and tools for high throughput rRNA analysis (2014) Nucleic Acids Res, 42, pp. 633-642
dc.relation.referencesWang, L, Zhang, J, Li, H, Yang, H, Peng, C, Peng, Z, Lu, L., Shift in the microbial community composition of surface water and sediment along an urban river (2018) Sci Total Environ, 627, pp. 600-612
dc.relation.referencesJin, D, Wang, P, Bai, Z, Wang, X, Peng, H, Qi, R, Yu, Z, Zhuang, G., Analysis of bacterial community in bulking sludge using culture-dependent and -independent approaches (2011) J Environ Sci, 23, pp. 1880-1887
dc.relation.referencesAzmuda, N, Fakruddin, M, Khan, SI, Birkeland, NK., Bacterial community profiling of tropical freshwaters in Bangladesh (2019) Front Public Heal, 7, pp. 1-16
dc.relation.referencesPoitelon, JB, Joyeux, M, Welté, B, Duguet, JP, Prestel, E, Lespinet, O, DuBow, MS., Assessment of phylogenetic diversity of bacterial microflora in drinking water using serial analysis of ribosomal sequence tags (2009) Water Res, 43, pp. 4197-4206
dc.relation.referencesVaz-Moreira, I, Nunes, OC, Manaia, CM., Ubiquitous and persistent Proteobacteria and other Gram-negative bacteria in drinking water (2017) Sci Total Environ, 586, pp. 1141-1149
dc.relation.referencesFerro, P, Vaz-Moreira, I, Manaia, CM., Betaproteobacteria are predominant in drinking water: are there reasons for concern? (2019) Crit Rev Microbiol, 45, pp. 649-667
dc.relation.referencesSchuetz, AN., Emerging agents of gastroenteritis: Aeromonas, Plesiomonas, and the diarrheagenic pathotypes of Escherichia coli (2019) Semin Diagn Pathol, 36, pp. 187-192
dc.relation.referencesFernández-Bravo, A, Figueras, MJ., (2020) An update on the genus Aeromonas: Taxonomy, epidemiology, and pathogenicityMicroorganisms
dc.relation.referencesFigueras Salvat, MJ, Ashbolt, N., AEROMONAS (2016) Glob Water Pathog Proj, pp. 3-10
dc.relation.referencesLynch, MJ, Swift, S, Kirke, DF, Keevil, CW, Dodd, CER, Williams, P., The regulation of biofilm development by quorum sensing in Aeromonas hydrophila (2002) Environ Microbiol, 4, pp. 18-28
dc.relation.referencesRazzolini, MTP, Günther, WMR, Martone-Rocha, S, de Luca, HD, Cardoso, MRA., Aeromonas presence in drinking water from collective reservoirs and wells in peri-urban area in Brazil (2010) Brazilian J Microbiol, 41, pp. 694-699
dc.relation.referencesPeter, A, Routledge, E., Present-day monitoring underestimates the risk of exposure to pathogenic bacteria from cold water storage tanks (2018) PLoS One, 13, pp. 1-21
dc.relation.referencesWynwood, SJ, Graham, GC, Weier, SL, Collet, TA, McKay, DB, Craig, SB., Leptospirosis from water sources (2014) Pathog Glob Health, 108, pp. 334-338
dc.relation.referencesLesnik, R, Brettar, I, Höfle, MG., Legionella species diversity and dynamics from surface reservoir to tap water: From cold adaptation to thermophily (2016) ISME J, 10, pp. 1064-1080
dc.relation.referencesWhiley, H., Legionella risk management and control in potable water systems: Argument for the abolishment of routine testing (2017) Int J Environ Res Public Health, 14
dc.relation.referencesMacIntyre, CR, Dyda, A, Bui, CM, Chughtai, AA., Rolling epidemic of Legionnaires’ disease outbreaks in small geographic areas article (2018) Emerg Microbes Infect, 7
dc.type.coarhttp://purl.org/coar/resource_type/c_6501
dc.type.versioninfo:eu-repo/semantics/publishedVersion
dc.type.driverinfo:eu-repo/semantics/article
dc.identifier.reponamereponame:Repositorio Institucional Universidad de Medellín
dc.identifier.repourlrepourl:https://repository.udem.edu.co/
dc.identifier.instnameinstname:Universidad de Medellín


Ficheros en el ítem

FicherosTamañoFormatoVer

No hay ficheros asociados a este ítem.

Este ítem aparece en la(s) siguiente(s) colección(ones)

Mostrar el registro sencillo del ítem